Instructor(s): Tony Capra

Introduction to computational issues and methods used in the field of bioinformatics and computational biology. This course emphasizes the implementation, analysis, and validation of methods. It is about attacking computational problems in biology, not expert use of existing tools. Areas addressed include analytical thinking, problem decomposition, and algorithm design and implementation. Assignments will focus on the design and implementation of key bioinformatics algorithms.

Instructor(s): Katie Pollard

Broad survey of bioinformatics with accompanying assignments. Topics covered include genomics, database searching, family/super-family analysis, structural genomics, complex systems, genetic circuits, and protein-protein interactions.

Instructor(s): Reza Abbasi-Asl

This course will establish the foundations of deep learning through lectures, weekly seminars, and a hands-on approach in Python. We will cover the basics of regression and classification, model optimization, and neural network architectures, including autoencoders, convolutional networks, and transformers, with the use cases of these models in biological and clinical research. This is the same class as BioE 212. Students should ensure they are registering with the right course number.

Instructor(s): Staff

Each course offering will focus on the literature of a current important area of Bioinformatics. Students will be expected to read assigned papers critically before class and to present and discuss papers in class. Students will also be expected to write and present a brief research proposal based upon their reading. Topics in Molecular, Cellular, developmental, systems, and computation biology will be covered in separate course offerings.

Instructor(s): Ryan Hernandez

This course consists of presentation and discussion of research in quantitative biology and bioinformatics by outside speakers.

Instructor(s): Staff

An introduction to the specific research currently underway within a faculty member's laboratory.

Instructor(s): Ryan Hernandez

This course gives students the opportunity to develop and polish their presentation and research skills. All second year and above BMI students present their research to other students, postdocs and faculty. Their presentations are critically evaluated and they are provided with constructive feedback regarding their discussion topic and presentation skills.

Instructor(s): Jim Wells

Critical review of published scientific papers from scholarly journals, including comprehension, analysis and evaluation of published scientific data.

Instructor(s): Staff

In this course, students will work together with a primary research advisor to select a research question and design a project workplace that will be carried out by the student. Through this activity, the student will gain experience in research strategy, learn techniques associated with modern biomedical research, and practice how to interpret results. At the conclusion of the course, the student will present on their progress.

Instructor(s): Ryan Hernandez

The Curricular Development & Academic Leadership course will offer training and leadership to prepare graduate students in scientific leadership roles in the classroom and beyond. Students will have a hands-on approach to structuring and executing a curriculum. Students must submit an application prior to course enrollment.